- Zhaoning Wang*, Songpeng Zu*, Ethan J Armand, Timothy H Loe, Jonathan A Rink, Wanying Wu, Yang Xie, Lei Chang, Chenxu Zhu, Nicholas D Johnson, Jasper Lee, Jackson K Willier, Silvia Cho, Stella Cao, Ariana S Barcoma, Nora Emerson, Hanqing Liu, Kangli Wang, Zane A Gibbs, Xiaomeng Gao, Sunan Xu, David Guo, Zhuowen Tu, Yang E Li, Joseph R Ecker, Maria Margarita Behrens, Bing Ren. Integrative Single-Cell Epigenomic Atlas Annotates the Regulatory Genome of the Adult Mouse Brain. bioRxiv (2026)
- Songpeng Zu*, Yang Eric Li*, Kangli Wang*, Ethan J Armand, Sainath Mamde, Maria Luisa Amaral, Yuelai Wang, Andre Chu, Yang Xie, Michael Miller, Jie Xu, Zhaoning Wang, Kai Zhang, Bojing Jia, Xiaomeng Hou, Lin Lin, Qian Yang, Seoyeon Lee, Bin Li, Samantha Kuan, Hanqing Liu, Jingtian Zhou, Antonio Pinto-Duarte, Jacinta Lucero, Julia Osteen, Michael Nunn, Kimberly A Smith, Bosiljka Tasic, Zizhen Yao, Hongkui Zeng, Zihan Wang, Jingbo Shang, M Margarita Behrens, Joseph R Ecker, Allen Wang, Sebastian Preissl, Bing Ren. Single-cell analysis of chromatin accessibility in the adult mouse brain. Nature (2023)
- Zhirui Hu*, Songpeng Zu*, Jun S Liu. SIMPLEs: a single-cell RNA sequencing imputation strategy preserving gene modules and cell clusters variation. NAR genomics and bioinformatics (2020)
- Zijian Ding, Songpeng Zu, Jin Gu. Evaluating the molecule-based prediction of clinical drug responses in cancer. Bioinformatics (2016)
- Songpeng Zu, Ting Chen, Shao Li. Global optimization-based inference of chemogenomic features from drug–target interactions. Bioinformatics (2015)
(*: co-first author)